THEANO.py
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__author__ = 'chunk'
from ...mfeat import *
from ...mmodel import *
from ...mspark import SC
from ...common import *
from .theanoutil import *
import numpy as np
from sklearn import cross_validation
from theano import function, config, shared, sandbox
import theano.tensor as T
import gzip
import cPickle
package_dir = os.path.dirname(os.path.abspath(__file__))
class ModelTHEANO(ModelBase):
"""
Some notes:
1.<http://deeplearning.net/software/theano/faq.html>
Error allocating 1411344000 bytes of device memory (out of memory). Driver report 203563008 bytes free and 3220897792 bytes total
This scenario arises when an operation requires allocation of a large contiguous block of memory but no blocks of sufficient size are available.
GPUs do not have virtual memory and as such all allocations must be assigned to a continuous memory region. CPUs do not have this limitation because or their support for virtual memory. Multiple allocations on a GPU can result in memory fragmentation which can makes it more difficult to find contiguous regions of memory of sufficient size during subsequent memory allocations.
"""
def __init__(self, toolset='cnn', sc=None):
ModelBase.__init__(self)
self.toolset = toolset
self.sparker = sc
self.model = None
def _train_cnn(self, X=None, Y=None, dataset=os.path.join(package_dir, '../../res/', 'mnist.pkl.gz'),
learning_rate=0.1, n_epochs=200,
nkerns=[20, 50],
batch_size=400):
# return example_cnn_ilscrop(X, Y, dataset=dataset, learning_rate=learning_rate, n_epochs=n_epochs, nkerns=nkerns,
# batch_size=batch_size)
X_train, X_test, Y_train, Y_test = cross_validation.train_test_split(X, Y, test_size=0.2, random_state=0)
train_set_x, train_set_y = shared_dataset((X_train, Y_train))
valid_set_x, valid_set_y = shared_dataset((X_train[:1000], Y_train[:1000]))
test_set_x, test_set_y = shared_dataset((X_test, Y_test))
# compute number of minibatches for training, validation and testing
n_train_batches = train_set_x.get_value(borrow=True).shape[0]
n_valid_batches = valid_set_x.get_value(borrow=True).shape[0]
n_test_batches = test_set_x.get_value(borrow=True).shape[0]
n_train_batches /= batch_size
n_valid_batches /= batch_size
n_test_batches /= batch_size
print train_set_x.get_value(borrow=True).shape, train_set_y.shape
rng = np.random.RandomState(12306)
index = T.lscalar() # index to a [mini]batch
# start-snippet-1
x = T.matrix('x') # the data is presented as rasterized images
y = T.ivector('y') # the labels are presented as 1D vector of
# [int] labels
######################
# BUILD ACTUAL MODEL #
######################
print '... building the model'
layer0_input = x.reshape((batch_size, 1, 304, 304))
# Construct the first convolutional pooling layer:
# filtering reduces the image size to (304-8+1 , 304-8+1) = (297, 297)
# maxpooling reduces this further to (297/2, 297/2) = (148, 148)
# 4D output tensor is thus of shape (batch_size, nkerns[0], 148, 148)
layer0 = ConvPoolLayer(
rng,
input=layer0_input,
image_shape=(batch_size, 1, 304, 304),
filter_shape=(nkerns[0], 1, 8, 8),
poolsize=(2, 2)
)
# Construct the second convolutional pooling layer
# filtering reduces the image size to (148-5+1, 148-5+1) = (144, 144)
# maxpooling reduces this further to (144/4, 144/4) = (36, 36)
# 4D output tensor is thus of shape (batch_size, nkerns[1], 36, 36)
layer1 = ConvPoolLayer(
rng,
input=layer0.output,
image_shape=(batch_size, nkerns[0], 148, 148),
filter_shape=(nkerns[1], nkerns[0], 5, 5),
poolsize=(4, 4)
)
# the HiddenLayer being fully-connected, it operates on 2D matrices of
# shape (batch_size, num_pixels) (i.e matrix of rasterized images).
# This will generate a matrix of shape (batch_size, nkerns[1] * 36 * 36),
# or (500, 50 * 36 * 36) = (500, 800) with the default values.
layer2_input = layer1.output.flatten(2)
# construct a fully-connected sigmoidal layer
layer2 = HiddenLayer(
rng,
input=layer2_input,
n_in=nkerns[1] * 36 * 36,
n_out=500,
activation=T.tanh
)
# classify the values of the fully-connected sigmoidal layer
layer3 = LogisticRegression(input=layer2.output, n_in=500, n_out=2)
# the cost we minimize during training is the NLL of the model
cost = layer3.negative_log_likelihood(y)
# create a function to compute the mistakes that are made by the model
test_model = theano.function(
[index],
layer3.errors(y),
givens={
x: test_set_x[index * batch_size: (index + 1) * batch_size],
y: test_set_y[index * batch_size: (index + 1) * batch_size]
}
)
validate_model = theano.function(
[index],
layer3.errors(y),
givens={
x: valid_set_x[index * batch_size: (index + 1) * batch_size],
y: valid_set_y[index * batch_size: (index + 1) * batch_size]
}
)
# create a list of all model parameters to be fit by gradient descent
params = layer3.params + layer2.params + layer1.params + layer0.params
# create a list of gradients for all model parameters
grads = T.grad(cost, params)
# train_model is a function that updates the model parameters by
# SGD Since this model has many parameters, it would be tedious to
# manually create an update rule for each model parameter. We thus
# create the updates list by automatically looping over all
# (params[i], grads[i]) pairs.
updates = [
(param_i, param_i - learning_rate * grad_i)
for param_i, grad_i in zip(params, grads)
]
"""
Total Parameters:
>>> 20 * 64 + 1000 * 25 + 50 * 36 * 36 * 500 + 500 * 2
32427280
"""
train_model = theano.function(
[index],
cost,
updates=updates,
givens={
x: train_set_x[index * batch_size: (index + 1) * batch_size],
y: train_set_y[index * batch_size: (index + 1) * batch_size]
}
)
# end-snippet-1
###############
# TRAIN MODEL #
###############
print '... training'
# early-stopping parameters
patience = 10000 # look as this many examples regardless
patience_increase = 2 # wait this much longer when a new best is
# found
improvement_threshold = 0.995 # a relative improvement of this much is
# considered significant
validation_frequency = min(n_train_batches, patience / 2)
# go through this many
# minibatche before checking the network
# on the validation set; in this case we
# check every epoch
best_validation_loss = np.inf
best_iter = 0
test_score = 0.
start_time = time.clock()
epoch = 0
done_looping = False
while (epoch < n_epochs) and (not done_looping):
epoch = epoch + 1
for minibatch_index in xrange(n_train_batches):
iter = (epoch - 1) * n_train_batches + minibatch_index
# if iter % 100 == 0:
print 'training @ iter = ', iter
cost_ij = train_model(minibatch_index)
if (iter + 1) % validation_frequency == 0:
# compute zero-one loss on validation set
validation_losses = [validate_model(i) for i
in xrange(n_valid_batches)]
this_validation_loss = np.mean(validation_losses)
print('epoch %i, minibatch %i/%i, validation error %f %%' %
(epoch, minibatch_index + 1, n_train_batches,
this_validation_loss * 100.))
# if we got the best validation score until now
if this_validation_loss < best_validation_loss:
#improve patience if loss improvement is good enough
if this_validation_loss < best_validation_loss * \
improvement_threshold:
patience = max(patience, iter * patience_increase)
# save best validation score and iteration number
best_validation_loss = this_validation_loss
best_iter = iter
# test it on the test set
test_losses = [
test_model(i)
for i in xrange(n_test_batches)
]
test_score = np.mean(test_losses)
print((' epoch %i, minibatch %i/%i, test error of '
'best model %f %%') %
(epoch, minibatch_index + 1, n_train_batches,
test_score * 100.))
if patience <= iter:
done_looping = True
break
end_time = time.clock()
print('Optimization complete.')
print('Best validation score of %f %% obtained at iteration %i, '
'with test performance %f %%' %
(best_validation_loss * 100., best_iter + 1, test_score * 100.))
print >> sys.stderr, ('The code for file ' +
os.path.split(__file__)[1] +
' ran for %.2fm' % ((end_time - start_time) / 60.))
def train(self, X, Y):
if self.toolset == 'cnn':
return self._train_cnn(X, Y)
else:
raise Exception("Unknown toolset!")
def predict(self, feat, model=None):
if self.toolset == 'cnn':
return self._predict_cnn(feat, model)
else:
raise Exception("Unknown toolset!")
def test(self, X, Y, model=None):
if self.toolset == 'cnn':
return self._test_cnn(X, Y, model)
else:
raise Exception("Unknown toolset!")